J3_8G7Q_020

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G7Q_020 not in the Motif Atlas

Geometric match to J3_4V9F_011

Geometric discrepancy: 0.1171

The information below is about J3_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8G7Q|1|A|G|30
8G7Q|1|A|C|31
*
8G7Q|1|A|G|474
8G7Q|1|A|C|475
8G7Q|1|A|G|476
8G7Q|1|A|A|477
8G7Q|1|A|A|478
8G7Q|1|A|A|479
8G7Q|1|A|A|480
8G7Q|1|A|G|481
*
8G7Q|1|A|C|509
8G7Q|1|A|C|510

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L20

Chain W

50S ribosomal protein L24