J3_8G7Q_024

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8G7Q|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G7Q_024 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0855

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8G7Q|1|A|G|297
8G7Q|1|A|G|298
8G7Q|1|A|A|299
8G7Q|1|A|A|300
8G7Q|1|A|G|301
*
8G7Q|1|A|C|316
8G7Q|1|A|G|317
8G7Q|1|A|C|318
8G7Q|1|A|G|319
8G7Q|1|A|A|320
8G7Q|1|A|U|321
8G7Q|1|A|A|322
8G7Q|1|A|C|323
8G7Q|1|A|A|324
8G7Q|1|A|G|325
*
8G7Q|1|A|C|337
8G7Q|1|A|G|338
8G7Q|1|A|U|339
8G7Q|1|A|A|340
8G7Q|1|A|C|341

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24