J3_8H6L_001
3D structure
- PDB id
- 8H6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human exon-defined spliceosome in the early B state.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAGUA*UUAUU*AUGG
- Length
- 14 nucleotides
- Bulged bases
- 8H6L|1|4A|U|53
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8H6L|1|4A|C|16
8H6L|1|4A|A|17
8H6L|1|4A|G|18
8H6L|1|4A|U|19
8H6L|1|4A|A|20
*
8H6L|1|4A|U|52
8H6L|1|4A|U|53
8H6L|1|4A|A|54
8H6L|1|4A|U|55
8H6L|1|4A|U|56
*
8H6L|1|6A|A|56
8H6L|1|6A|U|57
8H6L|1|6A|G|58
8H6L|1|6A|G|59
Current chains
- Chain 4A
- U4 snRNA
- Chain 6A
- U6 snRNA
Nearby chains
- Chain 2D
- Splicing factor 3A subunit 1
- Chain 4B
- U4/U6 small nuclear ribonucleoprotein Prp3
- Chain 4D
- U4/U6 small nuclear ribonucleoprotein Prp31
- Chain 4G
- Pre-mRNA-processing factor 6
- Chain 5B
- Pre-mRNA-processing-splicing factor 8
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