J3_8HL4_001

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CUAG*CGCAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8HL4|1|A16S|U|841, 8HL4|1|A16S|A|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL4|1|A16S|C|792
8HL4|1|A16S|U|793
8HL4|1|A16S|A|794
8HL4|1|A16S|G|795
*
8HL4|1|A16S|C|827
8HL4|1|A16S|G|828
8HL4|1|A16S|C|829
8HL4|1|A16S|A|830
8HL4|1|A16S|G|831
*
8HL4|1|A16S|C|838
8HL4|1|A16S|G|839
8HL4|1|A16S|U|840
8HL4|1|A16S|U|841
8HL4|1|A16S|A|842
8HL4|1|A16S|A|843
8HL4|1|A16S|G|844

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain AS2P

30S ribosomal protein S2

Chain AS5P

30S ribosomal protein S5

Chain AS8P

Small ribosomal subunit protein uS8

Chain S27E

30S ribosomal protein S27e