J3_8HL4_014

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GUAGGUG*CAAGC*GAACGAUC

Length

20 nucleotides

Bulged bases

8HL4|1|A23S|U|1743

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL4|1|A23S|G|1558
8HL4|1|A23S|U|1559
8HL4|1|A23S|A|1560
8HL4|1|A23S|G|1561
8HL4|1|A23S|G|1562
8HL4|1|A23S|U|1563
8HL4|1|A23S|G|1564
*
8HL4|1|A23S|C|1573
8HL4|1|A23S|A|1574
8HL4|1|A23S|A|1575
8HL4|1|A23S|G|1576
8HL4|1|A23S|C|1577
*
8HL4|1|A23S|G|1737
8HL4|1|A23S|A|1738
8HL4|1|A23S|A|1739
8HL4|1|A23S|C|1740
8HL4|1|A23S|G|1741
8HL4|1|A23S|A|1742
8HL4|1|A23S|U|1743
8HL4|1|A23S|C|1744

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L141

50S ribosomal protein L14e

Chain L34E

50S ribosomal protein L34e

Chain L45A

DUF2280 domain-containing protein