J3_8HL4_022

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GGGAUAAG*CGCGAAACG*CGC

Length

20 nucleotides

Bulged bases

8HL4|1|A16S|G|50, 8HL4|1|A16S|A|53, 8HL4|1|A16S|A|54

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL4|1|A16S|G|48
8HL4|1|A16S|G|49
8HL4|1|A16S|G|50
8HL4|1|A16S|A|51
8HL4|1|A16S|U|52
8HL4|1|A16S|A|53
8HL4|1|A16S|A|54
8HL4|1|A16S|G|55
*
8HL4|1|A16S|C|371
8HL4|1|A16S|G|372
8HL4|1|A16S|C|373
8HL4|1|A16S|G|374
8HL4|1|A16S|A|375
8HL4|1|A16S|A|376
8HL4|1|A16S|A|377
8HL4|1|A16S|C|378
8HL4|1|A16S|G|379
*
8HL4|1|A16S|C|405
8HL4|1|A16S|G|406
8HL4|1|A16S|C|407

Current chains

Chain A16S

16s rRNA (1493-MER)

Nearby chains

Chain AEFG

Elongation factor 2

Chain AS4P

30S ribosomal protein S4

Chain S12P

30S ribosomal protein S12