J3_8HL4_036
3D structure
- PDB id
- 8HL4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.62 Å
Loop
- Sequence
- UGACG*CC*GAAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HL4_036 not in the Motif Atlas
- Homologous match to J3_4V9F_017
- Geometric discrepancy: 0.2926
- The information below is about J3_4V9F_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8HL4|1|A23S|U|1586
8HL4|1|A23S|G|1587
8HL4|1|A23S|A|1588
8HL4|1|A23S|C|1589
8HL4|1|A23S|G|1590
*
8HL4|1|A23S|C|1718
8HL4|1|A23S|C|1719
*
8HL4|1|A23S|G|1723
8HL4|1|A23S|A|1724
8HL4|1|A23S|A|1725
8HL4|1|A23S|A|1726
8HL4|1|A23S|A|1727
8HL4|1|A23S|G|1728
Current chains
- Chain A23S
- 23s rRNA (3000-MER)
Nearby chains
- Chain AL2P
- 50S ribosomal protein L2
- Chain L34E
- 50S ribosomal protein L34e
- Chain L37A
- 50S ribosomal protein L37Ae
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