J3_8HSP_016
3D structure
- PDB id
- 8HSP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.32 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8HSP|1|a|A|2518, 8HSP|1|a|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HSP_016 not in the Motif Atlas
- Homologous match to J3_5J7L_046
- Geometric discrepancy: 0.0609
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8HSP|1|a|C|2517
8HSP|1|a|A|2518
8HSP|1|a|U|2519
8HSP|1|a|C|2520
*
8HSP|1|a|G|2545
8HSP|1|a|U|2546
8HSP|1|a|A|2547
*
8HSP|1|a|U|2561
8HSP|1|a|U|2562
8HSP|1|a|U|2563
8HSP|1|a|A|2564
8HSP|1|a|A|2565
8HSP|1|a|A|2566
8HSP|1|a|G|2567
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L14
Coloring options: