3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GC*GGAAUAU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8HTZ_019 not in the Motif Atlas
Geometric match to J3_5J7L_001
Geometric discrepancy: 0.0749
The information below is about J3_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.4
Basepair signature
cWW-cWW-cSW-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8HTZ|1|A|G|46
8HTZ|1|A|C|47
*
8HTZ|1|A|G|361
8HTZ|1|A|G|362
8HTZ|1|A|A|363
8HTZ|1|A|A|364
8HTZ|1|A|U|365
8HTZ|1|A|A|366
8HTZ|1|A|U|367
*
8HTZ|1|A|A|393
8HTZ|1|A|G|394
8HTZ|1|A|C|395

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain P
30S ribosomal protein S16

Coloring options:


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