3D structure

PDB id
8HU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.69 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
8HU1|1|a|U|686, 8HU1|1|a|A|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8HU1_010 not in the Motif Atlas
Homologous match to J3_5J7L_038
Geometric discrepancy: 0.0594
The information below is about J3_5J7L_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

8HU1|1|a|U|683
8HU1|1|a|G|684
8HU1|1|a|A|685
8HU1|1|a|U|686
8HU1|1|a|C|687
8HU1|1|a|U|688
8HU1|1|a|A|689
*
8HU1|1|a|U|773
8HU1|1|a|G|774
8HU1|1|a|G|775
*
8HU1|1|a|C|791
8HU1|1|a|A|792
8HU1|1|a|A|793
8HU1|1|a|A|794

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain c
50S ribosomal protein L2

Coloring options:


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