3D structure

PDB id
8HU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.69 Å

Loop

Sequence
CAAG*CCCAAAC*GUG
Length
14 nucleotides
Bulged bases
8HU1|1|a|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8HU1_013 not in the Motif Atlas
Homologous match to J3_7RQB_008
Geometric discrepancy: 0.0823
The information below is about J3_7RQB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_16623.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

8HU1|1|a|C|1306
8HU1|1|a|A|1307
8HU1|1|a|A|1308
8HU1|1|a|G|1309
*
8HU1|1|a|C|1605
8HU1|1|a|C|1606
8HU1|1|a|C|1607
8HU1|1|a|A|1608
8HU1|1|a|A|1609
8HU1|1|a|A|1610
8HU1|1|a|C|1611
*
8HU1|1|a|G|1620
8HU1|1|a|U|1621
8HU1|1|a|G|1622

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34

Coloring options:


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