J3_8HUJ_001

3D structure

PDB id

8HUJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.76 Å

Loop

Sequence

GAUGC*GGC*GUUAAAAAACGU

Length

20 nucleotides

Bulged bases

8HUJ|1|C|G|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HUJ|1|C|G|690
8HUJ|1|C|A|691
8HUJ|1|C|U|692
8HUJ|1|C|G|693
8HUJ|1|C|C|694
*
8HUJ|1|C|G|730
8HUJ|1|C|G|731
8HUJ|1|C|C|732
*
8HUJ|1|C|G|767
8HUJ|1|C|U|768
8HUJ|1|C|U|769
8HUJ|1|C|A|770
8HUJ|1|C|A|771
8HUJ|1|C|A|772
8HUJ|1|C|A|773
8HUJ|1|C|A|774
8HUJ|1|C|A|775
8HUJ|1|C|C|776
8HUJ|1|C|G|777
8HUJ|1|C|U|778

Current chains

Chain C

IRES RNA (J-K-St)

Nearby chains

Chain B

Eukaryotic translation initiation factor 4 gamma 1