J3_8I9R_011

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AGAAGC*GCAUUCGA

Length

16 nucleotides

Bulged bases

8I9R|1|C1|A|1047, 8I9R|1|C1|U|1076, 8I9R|1|C1|U|1077

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9R|1|C1|U|967
8I9R|1|C1|U|968
*
8I9R|1|C1|A|1044
8I9R|1|C1|G|1045
8I9R|1|C1|A|1046
8I9R|1|C1|A|1047
8I9R|1|C1|G|1048
8I9R|1|C1|C|1049
*
8I9R|1|C1|G|1073
8I9R|1|C1|C|1074
8I9R|1|C1|A|1075
8I9R|1|C1|U|1076
8I9R|1|C1|U|1077
8I9R|1|C1|C|1078
8I9R|1|C1|G|1079
8I9R|1|C1|A|1080

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LF

60S ribosomal protein l7-like protein

Chain LT

60S ribosomal protein l21-like protein