J3_8I9R_012

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAUACUU*AU*AG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9R|1|C1|C|1433
8I9R|1|C1|A|1434
8I9R|1|C1|A|1435
8I9R|1|C1|A|1436
8I9R|1|C1|U|1437
8I9R|1|C1|A|1438
8I9R|1|C1|C|1439
8I9R|1|C1|U|1440
8I9R|1|C1|U|1441
*
8I9R|1|C1|A|1858
8I9R|1|C1|U|1859
*
8I9R|1|C1|A|2314
8I9R|1|C1|G|2315

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cf

60S ribosome biogenesis protein Rrp14

Chain LP

60S ribosomal protein l17-like protein