J3_8I9R_013

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAGACG*CCUAGCAGG*CGUAUUGCAAUUUAGA

Length

31 nucleotides

Bulged bases

8I9R|1|C1|A|3125, 8I9R|1|C1|G|3126, 8I9R|1|C1|A|3159, 8I9R|1|C1|C|3161, 8I9R|1|C1|A|3208, 8I9R|1|C1|U|3210, 8I9R|1|C1|C|3212, 8I9R|1|C1|U|3215, 8I9R|1|C1|U|3216, 8I9R|1|C1|U|3217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9R|1|C1|U|3124
8I9R|1|C1|A|3125
8I9R|1|C1|G|3126
8I9R|1|C1|A|3127
8I9R|1|C1|C|3128
8I9R|1|C1|G|3129
*
8I9R|1|C1|C|3156
8I9R|1|C1|C|3157
8I9R|1|C1|U|3158
8I9R|1|C1|A|3159
8I9R|1|C1|G|3160
8I9R|1|C1|C|3161
8I9R|1|C1|A|3162
8I9R|1|C1|G|3163
8I9R|1|C1|G|3164
*
8I9R|1|C1|C|3205
8I9R|1|C1|G|3206
8I9R|1|C1|U|3207
8I9R|1|C1|A|3208
8I9R|1|C1|U|3209
8I9R|1|C1|U|3210
8I9R|1|C1|G|3211
8I9R|1|C1|C|3212
8I9R|1|C1|A|3213
8I9R|1|C1|A|3214
8I9R|1|C1|U|3215
8I9R|1|C1|U|3216
8I9R|1|C1|U|3217
8I9R|1|C1|A|3218
8I9R|1|C1|G|3219
8I9R|1|C1|A|3220

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain Lf

60S ribosomal protein l33-like protein