J3_8I9R_016

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAUAC*GG*UG

Length

10 nucleotides

Bulged bases

8I9R|1|C4|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8I9R_016 not in the Motif Atlas

Homologous match to J3_8C3A_059

Geometric discrepancy: 0.1477

The information below is about J3_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8I9R|1|C4|C|9
8I9R|1|C4|C|10
8I9R|1|C4|A|11
8I9R|1|C4|U|12
8I9R|1|C4|A|13
8I9R|1|C4|C|14
*
8I9R|1|C4|G|66
8I9R|1|C4|G|67
*
8I9R|1|C4|U|110
8I9R|1|C4|G|111

Current chains

Chain C4

RNA (119-MER)

Nearby chains

Chain Cy

Ribosome production factor 2 homolog

Chain LD

60S ribosomal protein l5-like protein