J3_8I9V_007

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAG*CGCCACAGAG*CGUAUA

Length

20 nucleotides

Bulged bases

8I9V|1|C1|C|203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9V|1|C1|U|179
8I9V|1|C1|G|180
8I9V|1|C1|A|181
8I9V|1|C1|G|182
*
8I9V|1|C1|C|198
8I9V|1|C1|G|199
8I9V|1|C1|C|200
8I9V|1|C1|C|201
8I9V|1|C1|A|202
8I9V|1|C1|C|203
8I9V|1|C1|A|204
8I9V|1|C1|G|205
8I9V|1|C1|A|206
8I9V|1|C1|G|207
*
8I9V|1|C1|C|219
8I9V|1|C1|G|220
8I9V|1|C1|U|221
8I9V|1|C1|A|222
8I9V|1|C1|U|223
8I9V|1|C1|A|224

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CR

Nucleolar protein 16

Chain LC

60S ribosomal protein L4-like protein

Chain LY

60S ribosomal protein L26-like protein