J3_8I9V_016
3D structure
- PDB id
- 8I9V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GAUAAGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8I9V|1|C2|U|60, 8I9V|1|C2|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8I9V_016 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0879
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8I9V|1|C2|A|44
8I9V|1|C2|C|45
*
8I9V|1|C2|G|58
8I9V|1|C2|A|59
8I9V|1|C2|U|60
8I9V|1|C2|A|61
8I9V|1|C2|A|62
8I9V|1|C2|G|63
8I9V|1|C2|U|64
*
8I9V|1|C2|A|96
8I9V|1|C2|A|97
8I9V|1|C2|U|98
8I9V|1|C2|C|99
8I9V|1|C2|U|100
Current chains
- Chain C2
- RNA (256-MER)
Nearby chains
- Chain CR
- Nucleolar protein 16
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
Coloring options: