J3_8I9W_001

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAUUUGAAA*UAAUUUGGAG*CGACG

Length

26 nucleotides

Bulged bases

8I9W|1|C1|G|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8I9W_001 not in the Motif Atlas

Homologous match to J3_8P9A_042

Geometric discrepancy: 0.2702

The information below is about J3_8P9A_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69230.1

Basepair signature

cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8I9W|1|C1|C|113
8I9W|1|C1|A|114
8I9W|1|C1|A|115
8I9W|1|C1|A|116
8I9W|1|C1|U|117
8I9W|1|C1|U|118
8I9W|1|C1|U|119
8I9W|1|C1|G|120
8I9W|1|C1|A|121
8I9W|1|C1|A|122
8I9W|1|C1|A|123
*
8I9W|1|C1|U|144
8I9W|1|C1|A|145
8I9W|1|C1|A|146
8I9W|1|C1|U|147
8I9W|1|C1|U|148
8I9W|1|C1|U|149
8I9W|1|C1|G|150
8I9W|1|C1|G|151
8I9W|1|C1|A|152
8I9W|1|C1|G|153
*
8I9W|1|C1|C|255
8I9W|1|C1|G|256
8I9W|1|C1|A|257
8I9W|1|C1|C|258
8I9W|1|C1|G|259

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CC

Ribosome biogenesis protein ERB1

Chain CE

RNA helicase

Chain CR

Nucleolar protein 16

Chain LG

60S ribosomal protein L8

Chain LL

60S ribosomal protein L13

Chain LN

Ribosomal protein L15

Chain Lh

dolichyl-diphosphooligosaccharide--protein glycotransferase

Chain Li

60S ribosomal protein L36