J3_8I9W_015

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAUG*CUAG

Length

10 nucleotides

Bulged bases

8I9W|1|C1|A|3256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9W|1|C1|C|3238
8I9W|1|C1|C|3239
*
8I9W|1|C1|G|3255
8I9W|1|C1|A|3256
8I9W|1|C1|U|3257
8I9W|1|C1|G|3258
*
8I9W|1|C1|C|3329
8I9W|1|C1|U|3330
8I9W|1|C1|A|3331
8I9W|1|C1|G|3332

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LP

60S ribosomal protein l17-like protein

Chain Ld

Putative 60S ribosomal protein