J3_8I9X_021
3D structure
- PDB id
- 8I9X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UAGACG*CCUAGCAGG*CGUAUUGCAAUUUAGA
- Length
- 31 nucleotides
- Bulged bases
- 8I9X|1|C1|A|3125, 8I9X|1|C1|G|3126, 8I9X|1|C1|A|3159, 8I9X|1|C1|G|3160, 8I9X|1|C1|G|3163, 8I9X|1|C1|A|3208, 8I9X|1|C1|U|3210, 8I9X|1|C1|C|3212
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8I9X|1|C1|U|3124
8I9X|1|C1|A|3125
8I9X|1|C1|G|3126
8I9X|1|C1|A|3127
8I9X|1|C1|C|3128
8I9X|1|C1|G|3129
*
8I9X|1|C1|C|3156
8I9X|1|C1|C|3157
8I9X|1|C1|U|3158
8I9X|1|C1|A|3159
8I9X|1|C1|G|3160
8I9X|1|C1|C|3161
8I9X|1|C1|A|3162
8I9X|1|C1|G|3163
8I9X|1|C1|G|3164
*
8I9X|1|C1|C|3205
8I9X|1|C1|G|3206
8I9X|1|C1|U|3207
8I9X|1|C1|A|3208
8I9X|1|C1|U|3209
8I9X|1|C1|U|3210
8I9X|1|C1|G|3211
8I9X|1|C1|C|3212
8I9X|1|C1|A|3213
8I9X|1|C1|A|3214
8I9X|1|C1|U|3215
8I9X|1|C1|U|3216
8I9X|1|C1|U|3217
8I9X|1|C1|A|3218
8I9X|1|C1|G|3219
8I9X|1|C1|A|3220
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CO
- DUF2423 domain-containing protein
- Chain LE
- 60S ribosomal protein L6
- Chain LM
- 60S ribosomal protein L14-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
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