J3_8I9Y_007

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGA*UUC*GAGAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9Y|1|C1|U|2379
8I9Y|1|C1|G|2380
8I9Y|1|C1|A|2381
*
8I9Y|1|C1|U|2569
8I9Y|1|C1|U|2570
8I9Y|1|C1|C|2722
*
8I9Y|1|C1|G|2752
8I9Y|1|C1|A|2757
8I9Y|1|C1|G|2758
8I9Y|1|C1|A|2759
8I9Y|1|C1|A|2760
8I9Y|1|C1|A|2761

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CA

Brix domain-containing protein

Chain CG

60S ribosome subunit biogenesis protein NIP7

Chain CX

60S ribosomal subunit-like protein