J3_8I9Y_018
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUAG*CGUUUCAAAG*CGUGUG
- Length
- 21 nucleotides
- Bulged bases
- 8I9Y|1|C1|C|1538, 8I9Y|1|C1|A|1540, 8I9Y|1|C1|G|1560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8I9Y|1|C1|C|1520
8I9Y|1|C1|A|1521
8I9Y|1|C1|U|1522
8I9Y|1|C1|A|1523
8I9Y|1|C1|G|1524
*
8I9Y|1|C1|C|1533
8I9Y|1|C1|G|1534
8I9Y|1|C1|U|1535
8I9Y|1|C1|U|1536
8I9Y|1|C1|U|1537
8I9Y|1|C1|C|1538
8I9Y|1|C1|A|1539
8I9Y|1|C1|A|1540
8I9Y|1|C1|A|1541
8I9Y|1|C1|G|1542
*
8I9Y|1|C1|C|1557
8I9Y|1|C1|G|1558
8I9Y|1|C1|U|1559
8I9Y|1|C1|G|1560
8I9Y|1|C1|U|1561
8I9Y|1|C1|G|1562
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CS
- AdoMet-dependent rRNA methyltransferase SPB1
- Chain LG
- 60S ribosomal protein L8
- Chain LN
- Ribosomal protein L15
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lj
- Ribosomal protein L37
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