J3_8I9Z_003

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAC*GGG*UAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9Z|1|C1|U|795
8I9Z|1|C1|G|796
8I9Z|1|C1|A|797
8I9Z|1|C1|A|798
8I9Z|1|C1|C|799
*
8I9Z|1|C1|G|887
8I9Z|1|C1|G|888
8I9Z|1|C1|G|889
*
8I9Z|1|C1|U|900
8I9Z|1|C1|A|906
8I9Z|1|C1|A|907

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CS

AdoMet-dependent rRNA methyltransferase SPB1

Chain Lj

Ribosomal protein L37