J3_8I9Z_021

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUGU*ACUUAU*AGACAUU

Length

18 nucleotides

Bulged bases

8I9Z|1|C1|U|2476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9Z|1|C1|A|2394
8I9Z|1|C1|U|2395
8I9Z|1|C1|U|2396
8I9Z|1|C1|G|2397
8I9Z|1|C1|U|2398
*
8I9Z|1|C1|A|2473
8I9Z|1|C1|C|2474
8I9Z|1|C1|U|2475
8I9Z|1|C1|U|2476
8I9Z|1|C1|A|2477
8I9Z|1|C1|U|2478
*
8I9Z|1|C1|A|2549
8I9Z|1|C1|G|2550
8I9Z|1|C1|A|2551
8I9Z|1|C1|C|2552
8I9Z|1|C1|A|2553
8I9Z|1|C1|U|2554
8I9Z|1|C1|U|2555

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CP

RNA methyltransferase nop2-like protein

Chain CY

Putative NOC2 family protein