J3_8IDT_009

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUC*GCCU(5MC)ACGAUCCU*A(OMG)(MHG)UGUC

Length

23 nucleotides

Bulged bases

8IDT|1|2|U|4374

QA status

Modified nucleotides: 5MC, OMG, MHG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IDT|1|2|G|4228
8IDT|1|2|U|4229
8IDT|1|2|C|4230
*
8IDT|1|2|G|4331
8IDT|1|2|C|4332
8IDT|1|2|C|4333
8IDT|1|2|U|4334
8IDT|1|2|5MC|4335
8IDT|1|2|A|4336
8IDT|1|2|C|4337
8IDT|1|2|G|4338
8IDT|1|2|A|4339
8IDT|1|2|U|4340
8IDT|1|2|C|4341
8IDT|1|2|C|4342
8IDT|1|2|U|4343
*
8IDT|1|2|A|4369
8IDT|1|2|OMG|4370
8IDT|1|2|MHG|4371
8IDT|1|2|U|4372
8IDT|1|2|G|4373
8IDT|1|2|U|4374
8IDT|1|2|C|4375

Current chains

Chain 2

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L27a

Chain W

60S ribosomal protein L36a

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21