J3_8IDT_018

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

8IDT|1|2|C|704, 8IDT|1|2|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IDT|1|2|C|451
8IDT|1|2|A|452
8IDT|1|2|G|453
8IDT|1|2|U|454
8IDT|1|2|C|455
*
8IDT|1|2|G|701
8IDT|1|2|U|702
8IDT|1|2|G|703
8IDT|1|2|C|704
8IDT|1|2|G|705
*
8IDT|1|2|C|1292
8IDT|1|2|G|1293
8IDT|1|2|A|1294
8IDT|1|2|C|1295
8IDT|1|2|G|1296

Current chains

Chain 2

28S rRNA

Nearby chains

Chain k

60S ribosomal protein L32

Chain n

60S ribosomal protein L35a

Chain o

60S ribosomal protein L6