J3_8IDT_019

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8IDT|1|2|C|962, 8IDT|1|2|G|965, 8IDT|1|2|C|967, 8IDT|1|2|C|968, 8IDT|1|2|C|969, 8IDT|1|2|G|970, 8IDT|1|2|U|971, 8IDT|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IDT|1|2|C|712
8IDT|1|2|C|713
*
8IDT|1|2|G|955
8IDT|1|2|A|956
8IDT|1|2|G|957
8IDT|1|2|G|958
8IDT|1|2|G|959
8IDT|1|2|A|960
8IDT|1|2|G|961
8IDT|1|2|C|962
8IDT|1|2|G|963
8IDT|1|2|A|964
8IDT|1|2|G|965
8IDT|1|2|A|966
8IDT|1|2|C|967
8IDT|1|2|C|968
8IDT|1|2|C|969
8IDT|1|2|G|970
8IDT|1|2|U|971
8IDT|1|2|C|972
8IDT|1|2|G|973
8IDT|1|2|C|974
8IDT|1|2|C|975
8IDT|1|2|G|976
*
8IDT|1|2|C|1278
8IDT|1|2|A|1279
8IDT|1|2|C|1280
8IDT|1|2|G|1281
8IDT|1|2|G|1282
8IDT|1|2|G|1283
8IDT|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain k

60S ribosomal protein L32

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7