J3_8IDY_018

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8IDY|1|2|C|962, 8IDY|1|2|G|965, 8IDY|1|2|C|967, 8IDY|1|2|C|968, 8IDY|1|2|C|969, 8IDY|1|2|G|970, 8IDY|1|2|U|971, 8IDY|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IDY|1|2|C|712
8IDY|1|2|C|713
*
8IDY|1|2|G|955
8IDY|1|2|A|956
8IDY|1|2|G|957
8IDY|1|2|G|958
8IDY|1|2|G|959
8IDY|1|2|A|960
8IDY|1|2|G|961
8IDY|1|2|C|962
8IDY|1|2|G|963
8IDY|1|2|A|964
8IDY|1|2|G|965
8IDY|1|2|A|966
8IDY|1|2|C|967
8IDY|1|2|C|968
8IDY|1|2|C|969
8IDY|1|2|G|970
8IDY|1|2|U|971
8IDY|1|2|C|972
8IDY|1|2|G|973
8IDY|1|2|C|974
8IDY|1|2|C|975
8IDY|1|2|G|976
*
8IDY|1|2|C|1278
8IDY|1|2|A|1279
8IDY|1|2|C|1280
8IDY|1|2|G|1281
8IDY|1|2|G|1282
8IDY|1|2|G|1283
8IDY|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain k

60S ribosomal protein L32

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7