J3_8IE3_014

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8IE3|1|2|A|218, 8IE3|1|2|G|219, 8IE3|1|2|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IE3|1|2|C|196
8IE3|1|2|A|197
8IE3|1|2|A|198
8IE3|1|2|G|199
*
8IE3|1|2|C|215
8IE3|1|2|C|216
8IE3|1|2|C|217
8IE3|1|2|A|218
8IE3|1|2|G|219
8IE3|1|2|C|220
8IE3|1|2|C|221
8IE3|1|2|C|222
8IE3|1|2|G|223
8IE3|1|2|U|224
8IE3|1|2|G|225
8IE3|1|2|G|226
8IE3|1|2|A|227
8IE3|1|2|C|228
*
8IE3|1|2|G|240
8IE3|1|2|G|241
8IE3|1|2|U|242
8IE3|1|2|A|243
8IE3|1|2|G|244

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain h

60S ribosomal protein L26