J3_8IE3_018

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8IE3|1|2|C|962, 8IE3|1|2|G|965, 8IE3|1|2|C|967, 8IE3|1|2|C|968, 8IE3|1|2|C|969, 8IE3|1|2|G|970, 8IE3|1|2|U|971, 8IE3|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IE3|1|2|C|712
8IE3|1|2|C|713
*
8IE3|1|2|G|955
8IE3|1|2|A|956
8IE3|1|2|G|957
8IE3|1|2|G|958
8IE3|1|2|G|959
8IE3|1|2|A|960
8IE3|1|2|G|961
8IE3|1|2|C|962
8IE3|1|2|G|963
8IE3|1|2|A|964
8IE3|1|2|G|965
8IE3|1|2|A|966
8IE3|1|2|C|967
8IE3|1|2|C|968
8IE3|1|2|C|969
8IE3|1|2|G|970
8IE3|1|2|U|971
8IE3|1|2|C|972
8IE3|1|2|G|973
8IE3|1|2|C|974
8IE3|1|2|C|975
8IE3|1|2|G|976
*
8IE3|1|2|C|1278
8IE3|1|2|A|1279
8IE3|1|2|C|1280
8IE3|1|2|G|1281
8IE3|1|2|G|1282
8IE3|1|2|G|1283
8IE3|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain k

60S ribosomal protein L32

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7