J3_8IE3_020

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGGAC*GCUAAGGAGUG*CUCACCUG

Length

25 nucleotides

Bulged bases

8IE3|1|2|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IE3|1|2|C|1966
8IE3|1|2|A|1967
8IE3|1|2|G|1968
8IE3|1|2|G|1969
8IE3|1|2|A|1970
8IE3|1|2|C|1971
*
8IE3|1|2|G|1995
8IE3|1|2|C|1996
8IE3|1|2|U|1997
8IE3|1|2|A|1998
8IE3|1|2|A|1999
8IE3|1|2|G|2000
8IE3|1|2|G|2001
8IE3|1|2|A|2002
8IE3|1|2|G|2003
8IE3|1|2|U|2004
8IE3|1|2|G|2005
*
8IE3|1|2|C|2014
8IE3|1|2|U|2015
8IE3|1|2|C|2016
8IE3|1|2|A|2017
8IE3|1|2|C|2018
8IE3|1|2|C|2019
8IE3|1|2|U|2020
8IE3|1|2|G|2021

Current chains

Chain 2

28S rRNA

Nearby chains

Chain J

mRNA turnover protein 4 homolog

Chain R

Ribosome biogenesis protein NSA2 homolog