J3_8IFB_009

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8IFB|1|a|U|686, 8IFB|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFB_009 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.05

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8IFB|1|a|U|683
8IFB|1|a|G|684
8IFB|1|a|A|685
8IFB|1|a|U|686
8IFB|1|a|C|687
8IFB|1|a|U|688
8IFB|1|a|A|689
*
8IFB|1|a|U|773
8IFB|1|a|G|774
8IFB|1|a|G|775
*
8IFB|1|a|C|791
8IFB|1|a|A|792
8IFB|1|a|A|793
8IFB|1|a|A|794

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2