J3_8IFB_010

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFB_010 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0483

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8IFB|1|a|C|698
8IFB|1|a|A|699
8IFB|1|a|G|700
*
8IFB|1|a|C|732
8IFB|1|a|G|733
8IFB|1|a|A|734
8IFB|1|a|A|735
8IFB|1|a|C|736
*
8IFB|1|a|G|760
8IFB|1|a|A|761
8IFB|1|a|U|762
8IFB|1|a|G|763

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2