J3_8IFC_005

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFC_005 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1123

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8IFC|1|A|C|990
8IFC|1|A|U|991
8IFC|1|A|U|992
8IFC|1|A|G|993
*
8IFC|1|A|C|1045
8IFC|1|A|A|1046
8IFC|1|A|G|1047
*
8IFC|1|A|C|1210
8IFC|1|A|U|1211
8IFC|1|A|U|1212
8IFC|1|A|A|1213
8IFC|1|A|C|1214
8IFC|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14