J3_8IFC_009

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8IFC|1|a|U|686, 8IFC|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFC_009 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0453

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8IFC|1|a|U|683
8IFC|1|a|G|684
8IFC|1|a|A|685
8IFC|1|a|U|686
8IFC|1|a|C|687
8IFC|1|a|U|688
8IFC|1|a|A|689
*
8IFC|1|a|U|773
8IFC|1|a|G|774
8IFC|1|a|G|775
*
8IFC|1|a|C|791
8IFC|1|a|A|792
8IFC|1|a|A|793
8IFC|1|a|A|794

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2