J3_8IFC_010

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFC_010 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0592

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8IFC|1|a|C|698
8IFC|1|a|A|699
8IFC|1|a|G|700
*
8IFC|1|a|C|732
8IFC|1|a|G|733
8IFC|1|a|A|734
8IFC|1|a|A|735
8IFC|1|a|C|736
*
8IFC|1|a|G|760
8IFC|1|a|A|761
8IFC|1|a|U|762
8IFC|1|a|G|763

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2