J3_8IFC_018

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFC_018 not in the Motif Atlas

Geometric match to J3_5J7L_001

Geometric discrepancy: 0.0753

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8IFC|1|A|G|46
8IFC|1|A|C|47
*
8IFC|1|A|G|361
8IFC|1|A|G|362
8IFC|1|A|A|363
8IFC|1|A|A|364
8IFC|1|A|U|365
8IFC|1|A|A|366
8IFC|1|A|U|367
*
8IFC|1|A|A|393
8IFC|1|A|G|394
8IFC|1|A|C|395

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16