J3_8IFC_029

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

8IFC|1|a|U|72, 8IFC|1|a|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFC_029 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0593

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8IFC|1|a|A|56
8IFC|1|a|C|57
*
8IFC|1|a|G|70
8IFC|1|a|A|71
8IFC|1|a|U|72
8IFC|1|a|A|73
8IFC|1|a|A|74
8IFC|1|a|G|75
8IFC|1|a|C|76
*
8IFC|1|a|G|110
8IFC|1|a|A|111
8IFC|1|a|U|112
8IFC|1|a|U|113
8IFC|1|a|U|114

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23

Chain x

50S ribosomal protein L29