3D structure

PDB id
8IFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Arbekacin-bound E.coli 70S ribosome in the PURE system
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
8IFC|1|a|A|2388, 8IFC|1|a|U|2390, 8IFC|1|a|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8IFC_033 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.0557
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8IFC|1|a|G|2282
8IFC|1|a|C|2283
8IFC|1|a|A|2284
*
8IFC|1|a|U|2384
8IFC|1|a|C|2385
8IFC|1|a|A|2386
8IFC|1|a|U|2387
8IFC|1|a|A|2388
8IFC|1|a|G|2389
8IFC|1|a|U|2390
8IFC|1|a|G|2391
8IFC|1|a|A|2392
8IFC|1|a|U|2393
8IFC|1|a|C|2394
8IFC|1|a|C|2395
*
8IFC|1|a|G|2421
8IFC|1|a|C|2422
8IFC|1|a|U|2423
8IFC|1|a|C|2424
8IFC|1|a|A|2425
8IFC|1|a|A|2426
8IFC|1|a|C|2427

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L33
Chain 2
50S ribosomal protein L35
Chain k
50S ribosomal protein L15
Chain v
50S ribosomal protein L27

Coloring options:


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