J3_8IFD_006
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GGAGAUG*CAGU*AGGGUGUAAAUCUC
- Length
- 25 nucleotides
- Bulged bases
- 8IFD|1|1A|C|2768
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFD|1|1A|G|2549
8IFD|1|1A|G|2550
8IFD|1|1A|A|2551
8IFD|1|1A|G|2552
8IFD|1|1A|A|2553
8IFD|1|1A|U|2554
8IFD|1|1A|G|2555
*
8IFD|1|1A|C|2572
8IFD|1|1A|A|2573
8IFD|1|1A|G|2574
8IFD|1|1A|U|2575
*
8IFD|1|1A|A|2757
8IFD|1|1A|G|2758
8IFD|1|1A|G|2759
8IFD|1|1A|G|2760
8IFD|1|1A|U|2761
8IFD|1|1A|G|2762
8IFD|1|1A|U|2763
8IFD|1|1A|A|2764
8IFD|1|1A|A|2765
8IFD|1|1A|A|2766
8IFD|1|1A|U|2767
8IFD|1|1A|C|2768
8IFD|1|1A|U|2769
8IFD|1|1A|C|2770
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2T
- 60S ribosomal protein L27
- Chain 2a
- 60S ribosomal protein L34
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