J3_8IFD_010

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

8IFD|1|1A|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|C|4970
8IFD|1|1A|A|4971
8IFD|1|1A|U|4972
*
8IFD|1|1A|G|4986
8IFD|1|1A|C|4987
8IFD|1|1A|U|4988
8IFD|1|1A|U|4989
8IFD|1|1A|C|4990
8IFD|1|1A|U|4991
*
8IFD|1|1A|A|5060
8IFD|1|1A|A|5061
8IFD|1|1A|G|5062
8IFD|1|1A|G|5063

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1E

60S ribosomal protein L3

Chain 2J

60S ribosomal protein L17

Chain 2X

60S ribosomal protein L31