J3_8IFD_012
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- AUCUUGGGAGCGGGCGUCCCCGCCGCCUCUCGGCGGGGCCCGAAGCAUU*AUGGAAUAG*CAUGAU
- Length
- 64 nucleotides
- Bulged bases
- 8IFD|1|2m|C|687, 8IFD|1|2m|U|688, 8IFD|1|2m|G|697, 8IFD|1|2m|U|732, 8IFD|1|2m|G|744, 8IFD|1|2m|G|751, 8IFD|1|2m|G|786, 8IFD|1|2m|G|787, 8IFD|1|2m|G|788, 8IFD|1|2m|U|871, 8IFD|1|2m|A|913
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFD|1|2m|A|685
8IFD|1|2m|U|686
8IFD|1|2m|C|687
8IFD|1|2m|U|688
8IFD|1|2m|U|689
8IFD|1|2m|G|690
8IFD|1|2m|G|691
8IFD|1|2m|G|692
8IFD|1|2m|A|693
8IFD|1|2m|G|694
8IFD|1|2m|C|695
8IFD|1|2m|G|696
8IFD|1|2m|G|697
8IFD|1|2m|G|698
8IFD|1|2m|C|730
8IFD|1|2m|G|731
8IFD|1|2m|U|732
8IFD|1|2m|C|733
8IFD|1|2m|C|734
8IFD|1|2m|C|735
8IFD|1|2m|C|736
8IFD|1|2m|G|737
8IFD|1|2m|C|738
8IFD|1|2m|C|739
8IFD|1|2m|G|744
8IFD|1|2m|C|745
8IFD|1|2m|C|746
8IFD|1|2m|U|747
8IFD|1|2m|C|748
8IFD|1|2m|U|749
8IFD|1|2m|C|750
8IFD|1|2m|G|751
8IFD|1|2m|G|752
8IFD|1|2m|C|753
8IFD|1|2m|G|786
8IFD|1|2m|G|787
8IFD|1|2m|G|788
8IFD|1|2m|G|789
8IFD|1|2m|C|790
8IFD|1|2m|C|791
8IFD|1|2m|C|792
8IFD|1|2m|G|793
8IFD|1|2m|A|794
8IFD|1|2m|A|795
8IFD|1|2m|G|796
8IFD|1|2m|C|797
8IFD|1|2m|A|798
8IFD|1|2m|U|799
8IFD|1|2m|U|800
*
8IFD|1|2m|A|865
8IFD|1|2m|U|866
8IFD|1|2m|G|867
8IFD|1|2m|G|868
8IFD|1|2m|A|869
8IFD|1|2m|A|870
8IFD|1|2m|U|871
8IFD|1|2m|A|872
8IFD|1|2m|G|873
*
8IFD|1|2m|C|912
8IFD|1|2m|A|913
8IFD|1|2m|U|914
8IFD|1|2m|G|915
8IFD|1|2m|A|916
8IFD|1|2m|U|917
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2L
- 60S ribosomal protein L19
- Chain 2q
- 40S ribosomal protein S4, X isoform
- Chain 2s
- 40S ribosomal protein S7
- Chain 2v
- 40S ribosomal protein S11
- Chain 3B
- 40S ribosomal protein S23
- Chain 3H
- 40S ribosomal protein S6
- Chain 3K
- 40S ribosomal protein S13
- Chain 3M
- 40S ribosomal protein S15a
Coloring options: