J3_8IFD_026
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 8IFD|1|1A|G|409, 8IFD|1|1A|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IFD_026 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.322
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8IFD|1|1A|U|380
8IFD|1|1A|U|381
8IFD|1|1A|G|382
8IFD|1|1A|A|383
8IFD|1|1A|A|384
8IFD|1|1A|A|385
8IFD|1|1A|A|386
8IFD|1|1A|G|387
8IFD|1|1A|A|388
8IFD|1|1A|A|389
8IFD|1|1A|C|390
*
8IFD|1|1A|G|401
8IFD|1|1A|A|402
8IFD|1|1A|G|403
8IFD|1|1A|U|404
8IFD|1|1A|U|405
8IFD|1|1A|C|406
8IFD|1|1A|A|407
8IFD|1|1A|A|408
8IFD|1|1A|G|409
8IFD|1|1A|A|410
8IFD|1|1A|G|411
8IFD|1|1A|G|412
8IFD|1|1A|G|413
8IFD|1|1A|C|414
8IFD|1|1A|G|415
*
8IFD|1|1C|C|19
8IFD|1|1C|A|20
Current chains
- Chain 1A
- 28S ribosomal RNA
- Chain 1C
- 5.8S ribosomal RNA
Nearby chains
- Chain 1F
- 60S ribosomal protein L4
- Chain 2J
- 60S ribosomal protein L17
- Chain 2S
- 60S ribosomal protein L26
- Chain 2f
- 60S ribosomal protein L39
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