J3_8IFD_027

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

8IFD|1|1A|C|704, 8IFD|1|1A|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|C|451
8IFD|1|1A|A|452
8IFD|1|1A|G|453
8IFD|1|1A|U|454
8IFD|1|1A|C|455
*
8IFD|1|1A|G|701
8IFD|1|1A|U|702
8IFD|1|1A|G|703
8IFD|1|1A|C|704
8IFD|1|1A|G|705
*
8IFD|1|1A|C|1292
8IFD|1|1A|G|1293
8IFD|1|1A|A|1294
8IFD|1|1A|C|1295
8IFD|1|1A|G|1296

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6

Chain 2Y

60S ribosomal protein L32

Chain 2Z

60S ribosomal protein L35a

Chain 2k

60S ribosomal protein L28