J3_8IFD_036

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCGGUUG*CCUUCGUCCUGG*CGUCACGCACCGCACGUUCGUG

Length

41 nucleotides

Bulged bases

8IFD|1|1A|C|4883, 8IFD|1|1A|A|4938, 8IFD|1|1A|C|4940, 8IFD|1|1A|A|4943, 8IFD|1|1A|C|4944, 8IFD|1|1A|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFD|1|1A|U|4748
8IFD|1|1A|C|4749
8IFD|1|1A|G|4750
8IFD|1|1A|G|4751
8IFD|1|1A|U|4752
8IFD|1|1A|U|4753
8IFD|1|1A|G|4754
*
8IFD|1|1A|C|4879
8IFD|1|1A|C|4880
8IFD|1|1A|U|4881
8IFD|1|1A|U|4882
8IFD|1|1A|C|4883
8IFD|1|1A|G|4884
8IFD|1|1A|U|4885
8IFD|1|1A|C|4886
8IFD|1|1A|C|4887
8IFD|1|1A|U|4888
8IFD|1|1A|G|4889
8IFD|1|1A|G|4890
*
8IFD|1|1A|C|4930
8IFD|1|1A|G|4931
8IFD|1|1A|U|4932
8IFD|1|1A|C|4933
8IFD|1|1A|A|4934
8IFD|1|1A|C|4935
8IFD|1|1A|G|4936
8IFD|1|1A|C|4937
8IFD|1|1A|A|4938
8IFD|1|1A|C|4939
8IFD|1|1A|C|4940
8IFD|1|1A|G|4941
8IFD|1|1A|C|4942
8IFD|1|1A|A|4943
8IFD|1|1A|C|4944
8IFD|1|1A|G|4945
8IFD|1|1A|U|4946
8IFD|1|1A|U|4947
8IFD|1|1A|C|4948
8IFD|1|1A|G|4949
8IFD|1|1A|U|4950
8IFD|1|1A|G|4951

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6

Chain 2G

60S ribosomal protein L14

Chain 2I

60S ribosomal protein L13a

Chain 2Z

60S ribosomal protein L35a