J3_8IFD_039

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFD_039 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.0907

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8IFD|1|2m|A|40
8IFD|1|2m|G|41
*
8IFD|1|2m|C|481
8IFD|1|2m|G|482
8IFD|1|2m|C|483
8IFD|1|2m|A|484
8IFD|1|2m|A|485
8IFD|1|2m|A|486
8IFD|1|2m|U|487
*
8IFD|1|2m|A|512
8IFD|1|2m|G|513
8IFD|1|2m|U|514

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3B

40S ribosomal protein S23

Chain 3I

40S ribosomal protein S9