J3_8IFD_041
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UGGA*UUAAGAG*CAUUA
- Length
- 16 nucleotides
- Bulged bases
- 8IFD|1|2m|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFD|1|2m|U|682
8IFD|1|2m|G|683
8IFD|1|2m|G|684
8IFD|1|2m|A|685
*
8IFD|1|2m|U|917
8IFD|1|2m|U|918
8IFD|1|2m|A|919
8IFD|1|2m|A|920
8IFD|1|2m|G|921
8IFD|1|2m|A|922
8IFD|1|2m|G|923
*
8IFD|1|2m|C|1019
8IFD|1|2m|A|1020
8IFD|1|2m|U|1021
8IFD|1|2m|U|1022
8IFD|1|2m|A|1023
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2s
- 40S ribosomal protein S7
- Chain 2v
- 40S ribosomal protein S11
- Chain 3B
- 40S ribosomal protein S23
- Chain 3K
- 40S ribosomal protein S13
- Chain 3M
- 40S ribosomal protein S15a
- Chain 3P
- 40S ribosomal protein S27
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