J3_8IFE_006

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GGAGAUG*CAGU*AGGGUGUAAAUCUC

Length

25 nucleotides

Bulged bases

8IFE|1|1A|C|2768, 8IFE|1|1A|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|1A|G|2549
8IFE|1|1A|G|2550
8IFE|1|1A|A|2551
8IFE|1|1A|G|2552
8IFE|1|1A|A|2553
8IFE|1|1A|U|2554
8IFE|1|1A|G|2555
*
8IFE|1|1A|C|2572
8IFE|1|1A|A|2573
8IFE|1|1A|G|2574
8IFE|1|1A|U|2575
*
8IFE|1|1A|A|2757
8IFE|1|1A|G|2758
8IFE|1|1A|G|2759
8IFE|1|1A|G|2760
8IFE|1|1A|U|2761
8IFE|1|1A|G|2762
8IFE|1|1A|U|2763
8IFE|1|1A|A|2764
8IFE|1|1A|A|2765
8IFE|1|1A|A|2766
8IFE|1|1A|U|2767
8IFE|1|1A|C|2768
8IFE|1|1A|U|2769
8IFE|1|1A|C|2770

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2T

60S ribosomal protein L27

Chain 2a

60S ribosomal protein L34