J3_8IFE_017

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

8IFE|1|2m|A|1240, 8IFE|1|2m|G|1256, 8IFE|1|2m|A|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IFE_017 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.2076

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8IFE|1|2m|C|1237
8IFE|1|2m|U|1238
8IFE|1|2m|U|1239
8IFE|1|2m|A|1240
8IFE|1|2m|A|1241
8IFE|1|2m|U|1242
8IFE|1|2m|U|1243
8IFE|1|2m|U|1244
*
8IFE|1|2m|G|1255
8IFE|1|2m|G|1256
8IFE|1|2m|G|1257
8IFE|1|2m|A|1258
8IFE|1|2m|A|1259
8IFE|1|2m|A|1260
8IFE|1|2m|C|1261
8IFE|1|2m|C|1262
8IFE|1|2m|U|1263
8IFE|1|2m|C|1264
8IFE|1|2m|A|1265
8IFE|1|2m|C|1266
*
8IFE|1|2m|G|1516
8IFE|1|2m|G|1517
8IFE|1|2m|C|1518
8IFE|1|2m|U|1519
8IFE|1|2m|G|1520

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 21

40S ribosomal protein S20

Chain 2w

40S ribosomal protein S15

Chain 2z

40S ribosomal protein S18

Chain 3E

40S ribosomal protein S29